J3_28UJ_026
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 28UJ|1|a|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28UJ_026 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.0968
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
28UJ|1|a|C|1306
28UJ|1|a|A|1307
28UJ|1|a|A|1308
28UJ|1|a|G|1309
*
28UJ|1|a|C|1605
28UJ|1|a|C|1606
28UJ|1|a|C|1607
28UJ|1|a|A|1608
28UJ|1|a|A|1609
28UJ|1|a|A|1610
28UJ|1|a|C|1611
*
28UJ|1|a|G|1620
28UJ|1|a|U|1621
28UJ|1|a|G|1622
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
Coloring options: