J3_28UM_025

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

28UM|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_28UM_025 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.121

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

28UM|1|a|C|1306
28UM|1|a|A|1307
28UM|1|a|A|1308
28UM|1|a|G|1309
*
28UM|1|a|C|1605
28UM|1|a|C|1606
28UM|1|a|C|1607
28UM|1|a|A|1608
28UM|1|a|A|1609
28UM|1|a|A|1610
28UM|1|a|C|1611
*
28UM|1|a|G|1620
28UM|1|a|U|1621
28UM|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34