J3_28ZV_002

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU

Length

20 nucleotides

Bulged bases

28ZV|1|S2|A|45, 28ZV|1|S2|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZV|1|S2|A|40
28ZV|1|S2|G|41
28ZV|1|S2|A|42
28ZV|1|S2|U|43
28ZV|1|S2|U|44
28ZV|1|S2|A|45
28ZV|1|S2|A|46
28ZV|1|S2|G|47
*
28ZV|1|S2|C|479
28ZV|1|S2|G|480
28ZV|1|S2|C|481
28ZV|1|S2|G|482
28ZV|1|S2|C|483
28ZV|1|S2|A2M|484
28ZV|1|S2|A|485
28ZV|1|S2|A|486
28ZV|1|S2|U|487
*
28ZV|1|S2|A2M|512
28ZV|1|S2|G|513
28ZV|1|S2|U|514

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23