J3_28ZX_006

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUC*GGACCAGAG*CAU(PSU)(PSU)

Length

18 nucleotides

Bulged bases

28ZX|1|S2|G|991

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZX|1|S2|A|938
28ZX|1|S2|U|939
28ZX|1|S2|U|940
28ZX|1|S2|C|941
*
28ZX|1|S2|G|985
28ZX|1|S2|G|986
28ZX|1|S2|A|987
28ZX|1|S2|C|988
28ZX|1|S2|C|989
28ZX|1|S2|A|990
28ZX|1|S2|G|991
28ZX|1|S2|A|992
28ZX|1|S2|G|993
*
28ZX|1|S2|C|1000
28ZX|1|S2|A|1001
28ZX|1|S2|U|1002
28ZX|1|S2|PSU|1003
28ZX|1|S2|PSU|1004

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26