J3_28ZX_008

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZX|1|S2|C|1218
28ZX|1|S2|C|1219
28ZX|1|S2|A|1220
28ZX|1|S2|G|1221
*
28ZX|1|S2|C|1645
28ZX|1|S2|C|1646
28ZX|1|S2|A|1647
28ZX|1|S2|G|1648
28ZX|1|S2|U|1649
28ZX|1|S2|A|1650
28ZX|1|S2|A|1651
*
28ZX|1|S2|U|1673
28ZX|1|S2|G|1674
28ZX|1|S2|A|1675
28ZX|1|S2|U|1676
28ZX|1|S2|U|1677
28ZX|1|S2|A2M|1678
28ZX|1|S2|A|1679
28ZX|1|S2|G|1680

Current chains

Chain S2

18S rRNA

Nearby chains

Chain D

Eukaryotic translation initiation factor 2 subunit 1

Chain SF

40S ribosomal protein S5

Chain SQ

40S ribosomal protein S16

Chain Sc

40S ribosomal protein S28