J3_299D_001

3D structure

PDB id

299D (explore in PDB, NAKB, or RNA 3D Hub)

Description

CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYME

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUGAUGAG*CGAAAC*GUCA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_299D_001 not in the Motif Atlas

Geometric match to J3_359D_001

Geometric discrepancy: 0.0731

The information below is about J3_359D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_45099.1

Basepair signature

cWW-cWW-F-F-F-cWW-F-cSW-F-tSH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

299D|1|A|U|21
299D|1|A|C|30
299D|1|A|U|40
299D|1|A|G|50
299D|1|A|A|60
299D|1|A|U|70
299D|1|A|G|80
299D|1|A|A|90
299D|1|A|G|101
*
299D|1|B|C|111
299D|1|B|G|120
299D|1|B|A|130
299D|1|B|A|140
299D|1|B|A|151
299D|1|B|C|152
*
299D|1|B|G|162
299D|1|B|U|161
299D|1|B|C|170
299D|1|B|A|11

Current chains

Chain A

RNA HAMMERHEAD RIBOZYME

Chain B

RNA HAMMERHEAD RIBOZYME

Nearby chains