J3_2AAR_002

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

2AAR|1|0|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AAR_002 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2527

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

2AAR|1|0|C|710
2AAR|1|0|C|711
2AAR|1|0|A|712
2AAR|1|0|G|713
*
2AAR|1|0|C|745
2AAR|1|0|G|746
2AAR|1|0|A|747
2AAR|1|0|A|748
2AAR|1|0|C|749
*
2AAR|1|0|G|773
2AAR|1|0|A|774
2AAR|1|0|U|775
2AAR|1|0|G|776
2AAR|1|0|A|777
2AAR|1|0|G|778

Current chains

Chain 0

23S ribosomal RNA

Nearby chains