J3_2AAR_005

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

2AAR|1|0|C|1623, 2AAR|1|0|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AAR_005 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.155

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

2AAR|1|0|C|1319
2AAR|1|0|A|1320
2AAR|1|0|A|1321
2AAR|1|0|G|1322
*
2AAR|1|0|C|1621
2AAR|1|0|G|1622
2AAR|1|0|C|1623
2AAR|1|0|A|1624
2AAR|1|0|A|1625
2AAR|1|0|A|1626
2AAR|1|0|C|1627
*
2AAR|1|0|G|1636
2AAR|1|0|U|1637
2AAR|1|0|G|1638

Current chains

Chain 0

23S ribosomal RNA

Nearby chains