J3_2AAR_007

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUC*GAG*UAGAAG

Length

12 nucleotides

Bulged bases

2AAR|1|0|U|2275, 2AAR|1|0|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AAR_007 not in the Motif Atlas

Homologous match to J3_7RQB_011

Geometric discrepancy: 0.4561

The information below is about J3_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.4

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

2AAR|1|0|C|2274
2AAR|1|0|U|2275
2AAR|1|0|C|2276
*
2AAR|1|0|G|2300
2AAR|1|0|A|2301
2AAR|1|0|G|2302
*
2AAR|1|0|U|2311
2AAR|1|0|A|2312
2AAR|1|0|G|2313
2AAR|1|0|A|2314
2AAR|1|0|A|2315
2AAR|1|0|G|2316

Current chains

Chain 0

23S ribosomal RNA

Nearby chains