J3_2AAR_008

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

2AAR|1|0|A|2497, 2AAR|1|0|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AAR_008 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1135

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

2AAR|1|0|C|2496
2AAR|1|0|A|2497
2AAR|1|0|U|2498
2AAR|1|0|C|2499
*
2AAR|1|0|G|2524
2AAR|1|0|U|2525
2AAR|1|0|U|2526
*
2AAR|1|0|A|2540
2AAR|1|0|U|2541
2AAR|1|0|U|2542
2AAR|1|0|A|2543
2AAR|1|0|A|2544
2AAR|1|0|A|2545
2AAR|1|0|G|2546

Current chains

Chain 0

23S ribosomal RNA

Nearby chains