J3_2AAR_009

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AAR_009 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1165

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

2AAR|1|0|G|30
2AAR|1|0|C|31
*
2AAR|1|0|G|485
2AAR|1|0|U|486
2AAR|1|0|G|487
2AAR|1|0|A|488
2AAR|1|0|A|489
2AAR|1|0|A|490
2AAR|1|0|A|491
2AAR|1|0|G|492
*
2AAR|1|0|C|519
2AAR|1|0|C|520

Current chains

Chain 0

23S ribosomal RNA

Nearby chains