J3_2AAR_012

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

2AAR|1|0|G|514, 2AAR|1|0|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AAR_012 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2879

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

2AAR|1|0|G|30
2AAR|1|0|C|31
*
2AAR|1|0|G|485
2AAR|1|0|U|486
2AAR|1|0|G|487
2AAR|1|0|A|488
2AAR|1|0|A|489
2AAR|1|0|A|490
2AAR|1|0|A|491
2AAR|1|0|G|492
2AAR|1|0|A|493
2AAR|1|0|A|494
2AAR|1|0|C|495
*
2AAR|1|0|G|506
2AAR|1|0|A|507
2AAR|1|0|G|508
2AAR|1|0|U|509
2AAR|1|0|G|510
2AAR|1|0|A|511
2AAR|1|0|A|512
2AAR|1|0|A|513
2AAR|1|0|G|514
2AAR|1|0|A|515
2AAR|1|0|G|516
2AAR|1|0|A|517
2AAR|1|0|A|518
2AAR|1|0|C|519
2AAR|1|0|C|520

Current chains

Chain 0

23S ribosomal RNA

Nearby chains