J3_2AAR_015

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

2AAR|1|0|C|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AAR_015 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1873

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

2AAR|1|0|G|1438
2AAR|1|0|G|1439
2AAR|1|0|G|1440
2AAR|1|0|A|1441
2AAR|1|0|C|1442
2AAR|1|0|G|1443
*
2AAR|1|0|C|1580
2AAR|1|0|C|1581
*
2AAR|1|0|G|1584
2AAR|1|0|A|1585
2AAR|1|0|A|1586
2AAR|1|0|A|1587
2AAR|1|0|A|1588
2AAR|1|0|G|1589
2AAR|1|0|C|1590

Current chains

Chain 0

23S ribosomal RNA

Nearby chains