J3_2AAR_017

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCC*GCUUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

2AAR|1|0|A|2367, 2AAR|1|0|U|2369, 2AAR|1|0|A|2405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AAR_017 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.1563

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.2

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

2AAR|1|0|G|2261
2AAR|1|0|C|2262
2AAR|1|0|C|2263
*
2AAR|1|0|G|2363
2AAR|1|0|C|2364
2AAR|1|0|U|2365
2AAR|1|0|U|2366
2AAR|1|0|A|2367
2AAR|1|0|G|2368
2AAR|1|0|U|2369
2AAR|1|0|G|2370
2AAR|1|0|A|2371
2AAR|1|0|A|2372
2AAR|1|0|C|2373
2AAR|1|0|C|2374
*
2AAR|1|0|G|2400
2AAR|1|0|A|2401
2AAR|1|0|U|2402
2AAR|1|0|C|2403
2AAR|1|0|A|2404
2AAR|1|0|A|2405
2AAR|1|0|C|2406

Current chains

Chain 0

23S ribosomal RNA

Nearby chains