J3_2AW7_007

3D structure

PDB id

2AW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CGUCAG*CGCAACC*GAUGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AW7_007 not in the Motif Atlas

Geometric match to J3_5J7L_008

Geometric discrepancy: 0.104

The information below is about J3_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.3

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2AW7|1|A|C|1063
2AW7|1|A|G|1064
2AW7|1|A|U|1065
2AW7|1|A|C|1066
2AW7|1|A|A|1067
2AW7|1|A|G|1068
*
2AW7|1|A|C|1107
2AW7|1|A|G|1108
2AW7|1|A|C|1109
2AW7|1|A|A|1110
2AW7|1|A|A|1111
2AW7|1|A|C|1112
2AW7|1|A|C|1113
*
2AW7|1|A|G|1187
2AW7|1|A|A|1188
2AW7|1|A|U|1189
2AW7|1|A|G|1190
2AW7|1|A|A|1191
2AW7|1|A|C|1192
2AW7|1|A|G|1193

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain C

30S ribosomal protein S3

Chain E

30S ribosomal protein S5

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14