J3_2CZJ_004

3D structure

PDB id

2CZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GAAACGGUCUCGAC*GGACG*CC

Length

21 nucleotides

Bulged bases

2CZJ|1|H|A|9, 2CZJ|1|H|A|10, 2CZJ|1|H|C|11, 2CZJ|1|H|G|12, 2CZJ|1|H|G|13, 2CZJ|1|H|U|14, 2CZJ|1|H|C|15, 2CZJ|1|H|U|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03719.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

2CZJ|1|H|G|7
2CZJ|1|H|A|8
2CZJ|1|H|A|9
2CZJ|1|H|A|10
2CZJ|1|H|C|11
2CZJ|1|H|G|12
2CZJ|1|H|G|13
2CZJ|1|H|U|14
2CZJ|1|H|C|15
2CZJ|1|H|U|16
2CZJ|1|H|C|17
2CZJ|1|H|G|18
2CZJ|1|H|A|19
2CZJ|1|H|C|20
*
2CZJ|1|H|G|35
2CZJ|1|H|G|46
2CZJ|1|H|A|47
2CZJ|1|H|C|48
2CZJ|1|H|G|49
*
2CZJ|1|H|C|65
2CZJ|1|H|C|66

Current chains

Chain H

tmRNA (63-MER)

Nearby chains

Chain E

SsrA-binding protein

Chain F

tmRNA (63-MER)

Chain G

SsrA-binding protein