Motif J3_03719.1 Version J3_03719.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 6-7 | 11-12 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_2CZJ_004 | 2CZJ | 0.0000 | 8 | H | tmRNA (63-MER) | G | 7 | A | 8 | C | 17 | G | 18 | A | 19 | C | 20 | * | G | 35 | G | 46 | A | 47 | C | 48 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cWW |
2 | J3_4V8Q_037 | 4V8Q | 0.5553 | 8 | BY | SsrA | G | 7 | A | 8 | C | 17 | G | 18 | A | 19 | C | 20 | * | G | 58 | G | 59 | A | 60 | C | 61 | G | 62 | * | C | 78 | C | 79 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAACGGUCUCGAC*GGACG*CC | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAACGGUCUCGA*GAC* | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-F-F-cWW-F
- Heat map statistics
- Min 0.56 | Avg 0.28 | Max 0.56
Coloring options: