2CZJ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2CZJ_009 | 1/B/26:29 | No text annotation HL_78677.1 | ||
| HL_2CZJ_002 | 1/B/53:61 | No text annotation HL_28252.8 | ||
| HL_2CZJ_003 | 1/D/25:30 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_2CZJ_004 | 1/D/53:61 | T-loop with 2 stacked bulged bases | geometric HL_5UD5_003 HL_28252.8 | |
| HL_2CZJ_010 | 1/F/26:29 | No text annotation | geometric HL_2CZJ_009 HL_78677.1 | |
| HL_2CZJ_006 | 1/F/53:61 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_2CZJ_007 | 1/H/25:30 | UNCG variation | ||
| HL_2CZJ_008 | 1/H/53:61 | T-loop with 2 stacked bulged bases |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2CZJ_001 | No text annotation | ||
| HL_2CZJ_005 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2CZJ_005 | 1/B/7:20, 1/B/35:49, 1/B/65:66 | No text annotation J3_46173.1 | ||
| J3_2CZJ_002 | 1/D/7:20, 1/D/35:49, 1/D/65:66 | No text annotation | geometric J3_2CZJ_004 NA | |
| J3_2CZJ_006 | 1/F/7:20, 1/F/35:49, 1/F/65:66 | No text annotation | geometric J3_2CZJ_004 NA | |
| J3_2CZJ_004 | 1/H/7:20, 1/H/35:49, 1/H/65:66 | No text annotation | geometric J3_2CZJ_005 J3_46173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_2CZJ_001 | No text annotation | ||
| J3_2CZJ_003 | No text annotation |
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