J3_2D3O_006

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

2D3O|1|0|C|1623, 2D3O|1|0|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2842

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

2D3O|1|0|C|1319
2D3O|1|0|A|1320
2D3O|1|0|A|1321
2D3O|1|0|G|1322
*
2D3O|1|0|C|1621
2D3O|1|0|G|1622
2D3O|1|0|C|1623
2D3O|1|0|A|1624
2D3O|1|0|A|1625
2D3O|1|0|A|1626
2D3O|1|0|C|1627
*
2D3O|1|0|G|1636
2D3O|1|0|U|1637
2D3O|1|0|G|1638

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains