J3_2D3O_010

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UC*GUUAAG*CAUCA

Length

13 nucleotides

Bulged bases

2D3O|1|0|U|2808, 2D3O|1|0|A|2810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_010 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.2691

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

2D3O|1|0|U|2789
2D3O|1|0|C|2790
*
2D3O|1|0|G|2806
2D3O|1|0|U|2807
2D3O|1|0|U|2808
2D3O|1|0|A|2809
2D3O|1|0|A|2810
2D3O|1|0|G|2811
*
2D3O|1|0|C|2857
2D3O|1|0|A|2858
2D3O|1|0|U|2859
2D3O|1|0|C|2860
2D3O|1|0|A|2861

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains