J3_2D3O_014

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

2D3O|1|0|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_014 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1519

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

2D3O|1|0|U|1357
2D3O|1|0|C|1358
2D3O|1|0|G|1359
2D3O|1|0|G|1360
2D3O|1|0|G|1361
2D3O|1|0|A|1362
2D3O|1|0|C|1363
*
2D3O|1|0|G|1394
2D3O|1|0|A|1395
2D3O|1|0|C|1396
2D3O|1|0|A|1397
2D3O|1|0|G|1398
*
2D3O|1|0|C|1415
2D3O|1|0|A|1416

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain R

50S RIBOSOMAL PROTEIN L23