J3_2E5L_016

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

2E5L|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2E5L_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1531

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

2E5L|1|A|C|990
2E5L|1|A|U|991
2E5L|1|A|U|992
2E5L|1|A|G|993
2E5L|1|A|A|994
2E5L|1|A|C|995
2E5L|1|A|A|996
2E5L|1|A|U|997
*
2E5L|1|A|A|1044
2E5L|1|A|C|1045
2E5L|1|A|A|1046
2E5L|1|A|G|1047
*
2E5L|1|A|C|1210
2E5L|1|A|U|1211
2E5L|1|A|U|1212
2E5L|1|A|A|1213
2E5L|1|A|C|1214
2E5L|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14