J3_2HHH_005

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

2HHH|1|A|C|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2HHH_005 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.14

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

2HHH|1|A|C|968
2HHH|1|A|U|969
2HHH|1|A|U|970
2HHH|1|A|G|971
2HHH|1|A|A|972
2HHH|1|A|C|973
2HHH|1|A|A|974
2HHH|1|A|U|975
*
2HHH|1|A|A|1027
2HHH|1|A|C|1028
2HHH|1|A|A|1029
2HHH|1|A|G|1030
*
2HHH|1|A|C|1192
2HHH|1|A|U|1193
2HHH|1|A|U|1194
2HHH|1|A|A|1195
2HHH|1|A|C|1196
2HHH|1|A|G|1197

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14