J3_2HHH_012
3D structure
- PDB id
- 2HHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of kasugamycin bound to the 30S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 2HHH|1|A|U|707
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2HHH_012 not in the Motif Atlas
- Homologous match to J3_4LFB_012
- Geometric discrepancy: 0.1083
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
2HHH|1|A|U|656
2HHH|1|A|G|657
*
2HHH|1|A|C|701
2HHH|1|A|G|702
2HHH|1|A|C|703
2HHH|1|A|C|704
2HHH|1|A|G|705
2HHH|1|A|A|706
2HHH|1|A|U|707
2HHH|1|A|G|708
2HHH|1|A|G|709
*
2HHH|1|A|C|716
2HHH|1|A|A|717
2HHH|1|A|G|718
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain K
- 30S ribosomal protein S11
- Chain O
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S18
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