J3_2J28_007

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2J28_007 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.081

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

2J28|1|B|C|2091
2J28|1|B|U|2092
2J28|1|B|G|2093
*
2J28|1|B|C|2196
2J28|1|B|U|2197
2J28|1|B|A|2198
2J28|1|B|A|2199
2J28|1|B|C|2200
*
2J28|1|B|G|2223
2J28|1|B|G|2224
2J28|1|B|A|2225
2J28|1|B|C|2226
2J28|1|B|A|2227
2J28|1|B|G|2228

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2

Chain H

50S RIBOSOMAL PROTEIN L9

Chain Z

50S RIBOSOMAL PROTEIN L31