J3_2J28_010
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 2J28|1|B|U|2833, 2J28|1|B|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2J28_010 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.2384
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
2J28|1|B|G|2812
2J28|1|B|A|2813
2J28|1|B|A|2814
2J28|1|B|C|2815
*
2J28|1|B|G|2831
2J28|1|B|U|2832
2J28|1|B|U|2833
2J28|1|B|G|2834
2J28|1|B|A|2835
2J28|1|B|U|2836
*
2J28|1|B|A|2882
2J28|1|B|A|2883
2J28|1|B|U|2884
2J28|1|B|G|2885
2J28|1|B|A|2886
2J28|1|B|A|2887
2J28|1|B|C|2888
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 0
- 50S RIBOSOMAL PROTEIN L32
- Chain D
- 50S RIBOSOMAL PROTEIN L3
- Chain N
- 50S RIBOSOMAL PROTEIN L17
- Chain S
- 50S RIBOSOMAL PROTEIN L22
Coloring options: