J3_2JL6_008

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

2JL6|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2JL6_008 not in the Motif Atlas

Geometric match to J3_8VTW_005

Geometric discrepancy: 0.0624

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

2JL6|1|A|C|1306
2JL6|1|A|A|1307
2JL6|1|A|A|1308
2JL6|1|A|G|1309
*
2JL6|1|A|C|1605
2JL6|1|A|G|1606
2JL6|1|A|C|1607
2JL6|1|A|A|1608
2JL6|1|A|A|1609
2JL6|1|A|A|1610
2JL6|1|A|C|1611
*
2JL6|1|A|G|1620
2JL6|1|A|U|1621
2JL6|1|A|G|1622

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 7

50S RIBOSOMAL PROTEIN L34