J3_2JL6_010

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2JL6_010 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.2465

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

2JL6|1|A|U|2091
2JL6|1|A|U|2092
2JL6|1|A|G|2093
*
2JL6|1|A|C|2196
2JL6|1|A|U|2197
2JL6|1|A|A|2198
2JL6|1|A|A|2199
2JL6|1|A|C|2200
*
2JL6|1|A|G|2223
2JL6|1|A|G|2224
2JL6|1|A|A|2225
2JL6|1|A|C|2226
2JL6|1|A|A|2227
2JL6|1|A|G|2228

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L28

Chain D

50S RIBOSOMAL PROTEIN L2

Chain I

50S RIBOSOMAL PROTEIN L9