J3_2JL6_011
3D structure
- PDB id
- 2JL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 2JL6|1|A|G|2334, 2JL6|1|A|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2JL6_011 not in the Motif Atlas
- Geometric match to J3_8VTW_007
- Geometric discrepancy: 0.0751
- The information below is about J3_8VTW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
2JL6|1|A|C|2295
2JL6|1|A|U|2296
2JL6|1|A|C|2297
*
2JL6|1|A|G|2321
2JL6|1|A|A|2322
2JL6|1|A|G|2323
*
2JL6|1|A|U|2332
2JL6|1|A|A|2333
2JL6|1|A|G|2334
2JL6|1|A|A|2335
2JL6|1|A|A|2336
2JL6|1|A|G|2337
Current chains
- Chain A
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 0
- 50S RIBOSOMAL PROTEIN L27
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 50S RIBOSOMAL PROTEIN L5
- Chain S
- 50S RIBOSOMAL PROTEIN L18
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