J3_2JL6_012

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

2JL6|1|A|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2JL6_012 not in the Motif Atlas

Geometric match to J3_8VTW_008

Geometric discrepancy: 0.0543

The information below is about J3_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.4

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

2JL6|1|A|C|2517
2JL6|1|A|A|2518
2JL6|1|A|U|2519
2JL6|1|A|C|2520
*
2JL6|1|A|G|2545
2JL6|1|A|U|2546
2JL6|1|A|U|2547
*
2JL6|1|A|A|2561
2JL6|1|A|U|2562
2JL6|1|A|U|2563
2JL6|1|A|A|2564
2JL6|1|A|A|2565
2JL6|1|A|A|2566
2JL6|1|A|G|2567

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L13

Chain O

50S RIBOSOMAL PROTEIN L14