J3_2O44_007

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O44_007 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.2039

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

2O44|1|A|U|2074
2O44|1|A|U|2075
2O44|1|A|G|2076
*
2O44|1|A|C|2179
2O44|1|A|U|2180
2O44|1|A|A|2181
2O44|1|A|A|2182
2O44|1|A|C|2183
*
2O44|1|A|G|2202
2O44|1|A|G|2203
2O44|1|A|A|2204
2O44|1|A|C|2205
2O44|1|A|C|2206
2O44|1|A|G|2207

Current chains

Chain A

23S rRNA

Nearby chains