J3_2O44_011

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UC*GUUAAG*CAUCA

Length

13 nucleotides

Bulged bases

2O44|1|A|U|2808, 2O44|1|A|A|2810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O44_011 not in the Motif Atlas

Geometric match to J3_7A0S_013

Geometric discrepancy: 0.2393

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

2O44|1|A|U|2789
2O44|1|A|C|2790
*
2O44|1|A|G|2806
2O44|1|A|U|2807
2O44|1|A|U|2808
2O44|1|A|A|2809
2O44|1|A|A|2810
2O44|1|A|G|2811
*
2O44|1|A|C|2857
2O44|1|A|A|2858
2O44|1|A|U|2859
2O44|1|A|C|2860
2O44|1|A|A|2861

Current chains

Chain A

23S rRNA

Nearby chains