J3_2O44_015

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

2O44|1|A|C|1358, 2O44|1|A|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O44_015 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1643

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

2O44|1|A|U|1357
2O44|1|A|C|1358
2O44|1|A|G|1359
2O44|1|A|G|1360
2O44|1|A|G|1361
2O44|1|A|A|1362
2O44|1|A|C|1363
*
2O44|1|A|G|1394
2O44|1|A|A|1395
2O44|1|A|C|1396
2O44|1|A|A|1397
2O44|1|A|G|1398
*
2O44|1|A|C|1415
2O44|1|A|A|1416

Current chains

Chain A

23S rRNA

Nearby chains