J3_2O44_024

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

2O44|1|A|C|1623, 2O44|1|A|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O44_024 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2193

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

2O44|1|A|C|1319
2O44|1|A|A|1320
2O44|1|A|A|1321
2O44|1|A|G|1322
*
2O44|1|A|C|1621
2O44|1|A|G|1622
2O44|1|A|C|1623
2O44|1|A|A|1624
2O44|1|A|A|1625
2O44|1|A|A|1626
2O44|1|A|C|1627
*
2O44|1|A|G|1636
2O44|1|A|U|1637
2O44|1|A|G|1638

Current chains

Chain A

23S rRNA

Nearby chains