J3_2O45_008

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

2O45|1|A|A|2497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O45_008 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1831

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

2O45|1|A|C|2496
2O45|1|A|A|2497
2O45|1|A|U|2498
2O45|1|A|C|2499
*
2O45|1|A|G|2524
2O45|1|A|U|2525
2O45|1|A|U|2526
*
2O45|1|A|A|2540
2O45|1|A|U|2541
2O45|1|A|U|2542
2O45|1|A|A|2543
2O45|1|A|A|2544
2O45|1|A|A|2545
2O45|1|A|G|2546

Current chains

Chain A

23S rRNA

Nearby chains