J3_2O45_010

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UC*GUUAAG*CAUCA

Length

13 nucleotides

Bulged bases

2O45|1|A|U|2808, 2O45|1|A|A|2810, 2O45|1|A|U|2859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O45_010 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.2428

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

2O45|1|A|U|2789
2O45|1|A|C|2790
*
2O45|1|A|G|2806
2O45|1|A|U|2807
2O45|1|A|U|2808
2O45|1|A|A|2809
2O45|1|A|A|2810
2O45|1|A|G|2811
*
2O45|1|A|C|2857
2O45|1|A|A|2858
2O45|1|A|U|2859
2O45|1|A|C|2860
2O45|1|A|A|2861

Current chains

Chain A

23S rRNA

Nearby chains