J3_2O45_016

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

2O45|1|A|C|1396, 2O45|1|A|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O45_016 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1534

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

2O45|1|A|U|1357
2O45|1|A|C|1358
2O45|1|A|G|1359
2O45|1|A|G|1360
2O45|1|A|G|1361
2O45|1|A|A|1362
2O45|1|A|C|1363
*
2O45|1|A|G|1394
2O45|1|A|A|1395
2O45|1|A|C|1396
2O45|1|A|A|1397
2O45|1|A|G|1398
*
2O45|1|A|C|1415
2O45|1|A|A|1416

Current chains

Chain A

23S rRNA

Nearby chains