J3_2OGO_004

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

2OGO|1|0|A|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OGO_004 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1066

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2OGO|1|0|C|1311
2OGO|1|0|G|1312
2OGO|1|0|U|1313
2OGO|1|0|A|1314
2OGO|1|0|A|1315
2OGO|1|0|G|1316
*
2OGO|1|0|C|1641
2OGO|1|0|G|1642
2OGO|1|0|A|1643
*
2OGO|1|0|U|1656
2OGO|1|0|A|1657
2OGO|1|0|A|1658
2OGO|1|0|G|1659

Current chains

Chain 0

23S ribosomal RNA

Nearby chains