J3_2OGO_005

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

2OGO|1|0|C|1623, 2OGO|1|0|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OGO_005 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.2473

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

2OGO|1|0|C|1319
2OGO|1|0|A|1320
2OGO|1|0|A|1321
2OGO|1|0|G|1322
*
2OGO|1|0|C|1621
2OGO|1|0|G|1622
2OGO|1|0|C|1623
2OGO|1|0|A|1624
2OGO|1|0|A|1625
2OGO|1|0|A|1626
2OGO|1|0|C|1627
*
2OGO|1|0|G|1636
2OGO|1|0|U|1637
2OGO|1|0|G|1638

Current chains

Chain 0

23S ribosomal RNA

Nearby chains