J3_2OGO_018

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GCC*GCUUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

2OGO|1|0|A|2367, 2OGO|1|0|U|2402, 2OGO|1|0|A|2405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OGO_018 not in the Motif Atlas

Homologous match to J3_7A0S_020

Geometric discrepancy: 0.123

The information below is about J3_7A0S_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.2

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

2OGO|1|0|G|2261
2OGO|1|0|C|2262
2OGO|1|0|C|2263
*
2OGO|1|0|G|2363
2OGO|1|0|C|2364
2OGO|1|0|U|2365
2OGO|1|0|U|2366
2OGO|1|0|A|2367
2OGO|1|0|G|2368
2OGO|1|0|U|2369
2OGO|1|0|G|2370
2OGO|1|0|A|2371
2OGO|1|0|A|2372
2OGO|1|0|C|2373
2OGO|1|0|C|2374
*
2OGO|1|0|G|2400
2OGO|1|0|A|2401
2OGO|1|0|U|2402
2OGO|1|0|C|2403
2OGO|1|0|A|2404
2OGO|1|0|A|2405
2OGO|1|0|C|2406

Current chains

Chain 0

23S ribosomal RNA

Nearby chains