J3_2OGO_021

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

2OGO|1|0|C|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OGO_021 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.2727

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

2OGO|1|0|G|1438
2OGO|1|0|G|1439
2OGO|1|0|G|1440
2OGO|1|0|A|1441
2OGO|1|0|C|1442
2OGO|1|0|G|1443
*
2OGO|1|0|C|1580
2OGO|1|0|C|1581
*
2OGO|1|0|G|1584
2OGO|1|0|A|1585
2OGO|1|0|A|1586
2OGO|1|0|A|1587
2OGO|1|0|A|1588
2OGO|1|0|G|1589
2OGO|1|0|C|1590

Current chains

Chain 0

23S ribosomal RNA

Nearby chains