J3_2OTJ_009
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUC*GUGA*UAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 2OTJ|1|0|A|2553, 2OTJ|1|0|U|2554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2OTJ_009 not in the Motif Atlas
- Homologous match to J3_4V9F_009
- Geometric discrepancy: 0.0308
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69441.1
- Basepair signature
- cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 1
Unit IDs
2OTJ|1|0|C|2552
2OTJ|1|0|A|2553
2OTJ|1|0|U|2554
2OTJ|1|0|C|2555
*
2OTJ|1|0|G|2580
2OTJ|1|0|U|2581
2OTJ|1|0|G|2582
2OTJ|1|0|A|2583
*
2OTJ|1|0|U|2595
2OTJ|1|0|A|2596
2OTJ|1|0|U|2597
2OTJ|1|0|U|2598
2OTJ|1|0|A|2599
2OTJ|1|0|A|2600
2OTJ|1|0|A|2601
2OTJ|1|0|G|2602
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain J
- 50S ribosomal protein L13P
- Chain K
- 50S ribosomal protein L14P
Coloring options: