J3_2OTL_001
3D structure
- PDB id
- 2OTL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Girodazole bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAAC*GUGUCAG*CAG
- Length
- 15 nucleotides
- Bulged bases
- 2OTL|1|0|A|272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2OTL_001 not in the Motif Atlas
- Homologous match to J3_4V9F_001
- Geometric discrepancy: 0.0392
- The information below is about J3_4V9F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_96248.1
- Basepair signature
- cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
2OTL|1|0|C|240
2OTL|1|0|A|241
2OTL|1|0|A|242
2OTL|1|0|A|243
2OTL|1|0|C|244
*
2OTL|1|0|G|267
2OTL|1|0|U|268
2OTL|1|0|G|269
2OTL|1|0|U|270
2OTL|1|0|C|271
2OTL|1|0|A|272
2OTL|1|0|G|273
*
2OTL|1|0|C|377
2OTL|1|0|A|378
2OTL|1|0|G|379
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L7Ae
- Chain M
- 50S ribosomal protein L15e
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