J3_2QA4_001

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAC*GUGUCAG*CAG

Length

15 nucleotides

Bulged bases

2QA4|1|0|A|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QA4_001 not in the Motif Atlas

Homologous match to J3_4V9F_001

Geometric discrepancy: 0.0927

The information below is about J3_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_96248.1

Basepair signature

cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

2QA4|1|0|C|240
2QA4|1|0|A|241
2QA4|1|0|A|242
2QA4|1|0|A|243
2QA4|1|0|C|244
*
2QA4|1|0|G|267
2QA4|1|0|U|268
2QA4|1|0|G|269
2QA4|1|0|U|270
2QA4|1|0|C|271
2QA4|1|0|A|272
2QA4|1|0|G|273
*
2QA4|1|0|C|377
2QA4|1|0|A|378
2QA4|1|0|G|379

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e