J3_2QA4_009

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

2QA4|1|0|A|2553, 2QA4|1|0|U|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QA4_009 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0622

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

2QA4|1|0|C|2552
2QA4|1|0|A|2553
2QA4|1|0|U|2554
2QA4|1|0|C|2555
*
2QA4|1|0|G|2580
2QA4|1|0|U|2581
2QA4|1|0|G|2582
2QA4|1|0|A|2583
*
2QA4|1|0|U|2595
2QA4|1|0|A|2596
2QA4|1|0|U|2597
2QA4|1|0|U|2598
2QA4|1|0|A|2599
2QA4|1|0|A|2600
2QA4|1|0|A|2601
2QA4|1|0|G|2602

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P

Chain K

50S ribosomal protein L14P