J3_2QBG_004

3D structure

PDB id

2QBG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 50S subunit of the second 70S ribosome, with RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QBG_004 not in the Motif Atlas

Geometric match to J3_1MMS_001

Geometric discrepancy: 0.1946

The information below is about J3_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

2QBG|1|B|G|1055
2QBG|1|B|G|1056
2QBG|1|B|A|1057
*
2QBG|1|B|U|1081
2QBG|1|B|U|1082
2QBG|1|B|U|1083
2QBG|1|B|A|1084
2QBG|1|B|A|1085
2QBG|1|B|A|1086
2QBG|1|B|G|1087
*
2QBG|1|B|C|1102
2QBG|1|B|A|1103
2QBG|1|B|C|1104

Current chains

Chain B

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain I

50S ribosomal protein L11