J3_2QEX_001

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAAC*GUGUCAG*CAG

Length

15 nucleotides

Bulged bases

2QEX|1|0|A|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QEX_001 not in the Motif Atlas

Homologous match to J3_4V9F_001

Geometric discrepancy: 0.0565

The information below is about J3_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_96248.1

Basepair signature

cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

2QEX|1|0|C|240
2QEX|1|0|A|241
2QEX|1|0|A|242
2QEX|1|0|A|243
2QEX|1|0|C|244
*
2QEX|1|0|G|267
2QEX|1|0|U|268
2QEX|1|0|G|269
2QEX|1|0|U|270
2QEX|1|0|C|271
2QEX|1|0|A|272
2QEX|1|0|G|273
*
2QEX|1|0|C|377
2QEX|1|0|A|378
2QEX|1|0|G|379

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e