J3_2UU9_005

3D structure

PDB id

2UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2UU9_005 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1923

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

2UU9|1|A|C|990
2UU9|1|A|U|991
2UU9|1|A|U|992
2UU9|1|A|G|993
2UU9|1|A|A|994
2UU9|1|A|C|995
2UU9|1|A|A|996
2UU9|1|A|U|997
*
2UU9|1|A|A|1044
2UU9|1|A|C|1045
2UU9|1|A|A|1046
2UU9|1|A|G|1047
*
2UU9|1|A|C|1210
2UU9|1|A|U|1211
2UU9|1|A|U|1212
2UU9|1|A|A|1213
2UU9|1|A|C|1214
2UU9|1|A|G|1215

Current chains

Chain A

16S RRNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14