J3_2UUB_016
3D structure
- PDB id
- 2UUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 2UUB|1|A|U|1212, 2UUB|1|A|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2UUB_016 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.2082
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
2UUB|1|A|C|990
2UUB|1|A|U|991
2UUB|1|A|U|992
2UUB|1|A|G|993
2UUB|1|A|A|994
2UUB|1|A|C|995
2UUB|1|A|A|996
2UUB|1|A|U|997
*
2UUB|1|A|A|1044
2UUB|1|A|C|1045
2UUB|1|A|A|1046
2UUB|1|A|G|1047
*
2UUB|1|A|C|1210
2UUB|1|A|U|1211
2UUB|1|A|U|1212
2UUB|1|A|A|1213
2UUB|1|A|C|1214
2UUB|1|A|G|1215
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain N
- 30S RIBOSOMAL PROTEIN S14
Coloring options: