3D structure

PDB id
2UUC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
2UUC|1|A|U|871, 2UUC|1|A|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_2UUC_001 not in the Motif Atlas
Homologous match to J3_4LFB_001
Geometric discrepancy: 0.04
The information below is about J3_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

2UUC|1|A|C|826
2UUC|1|A|U|827
2UUC|1|A|A|828
2UUC|1|A|G|829
*
2UUC|1|A|C|857
2UUC|1|A|G|858
2UUC|1|A|A|859
2UUC|1|A|A|860
2UUC|1|A|G|861
*
2UUC|1|A|C|868
2UUC|1|A|G|869
2UUC|1|A|U|870
2UUC|1|A|U|871
2UUC|1|A|A|872
2UUC|1|A|A|873
2UUC|1|A|G|874

Current chains

Chain A
16S RRNA

Nearby chains

Chain B
30S RIBOSOMAL PROTEIN S2
Chain H
30S RIBOSOMAL PROTEIN S8

Coloring options:


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